Collaborative visit to Japan

After several years working together we finally met up with Dr Hiroshi Asakura (National Institute of Health Sciences, Kanagawa) in person. During a recent visit to Japan, Sam and Ben met up with Hiroshi and Koji in Tokyo to discuss ongoing projects.

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From left: Ben Pascoe, Hiroshi Asakura, Koji Yahara & Sam Sheppard

Previous work with Hiroshi includes our paper on Enhanced biofilm formation evolves from divergent genetic backgrounds in host generalist Campylobacter jejuni with future work in the pipeline!

Egyptian collaboration

Dr Mohamed Elhadidy has been visiting the lab this month from Mansoura University in Egypt. Mohamed is an Associate Professor and in addition to enjoying the glorious summer weather in Bath, has been learning about our sequencing and analysis techniques with a view to building a relationship for collaboration. Everyone in the lab is looking forwards to working together in the future.

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Jess, Mohamed and Ben

 

Chiang Mai Salmonella collaboration

Our first paper has been published as part of what we hope will continue to be a fruitful collaboration with researchers at Chiang Mai University in Thailand. The manuscript focuses on identification of Salmonella Weltevrenden outbreak strains in the pork production chain in Chiang Mai. This Salmonella serovar was the dominant serovar found in the regions pork production 15 years ago, but has now been almost completely replaced by other, multi-drug resistant serovars. The Weltevrenden serovar rarely carries antimicrobial resistance genes, however the isolates we do find remaining in the region have began to acquire resistant genotypes. You can read the paper here.

 

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Collaboration visit to Sheffield

Sam, Ben and Evangelos enjoyed a productive collaboration meeting with Prof. David Kelly and Aidan Taylor at the University of Sheffield to discuss various aspects of Campylobacter genomics / biochemistry. Guillaume was also able to join us from Australia via Skype before he went to bed! Thanks again to David and Aidan for being excellent hosts and we have some exciting projects ahead.

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Bon voyage, Guillaume!

After 6 years, 36 papers (and counting…) and 1 book Guillaume is leaving us for a new adventure in Australia. Everyone in the lab wishes him well in his new position in the Systems Genomics lab at the Baker Heart & Diabetes Institute. 

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Thanks to everyone for coming out to wish Guillaume well: Jean, Leo, Jess, Ben, Sam, Sion, Ed, Lyndsay, Nicola, Kay and especially Josie &  Matt for coming all the way from Swansea. 

Sheppard Lab representation at the Microbiology Society meeting in Birmingham

Sheppard Lab was well represented at the recent Microbiology Society meeting in Birmingham with Ben, Evangelos and Jess all presenting work in the Bacterial zoonoses: ecology, epidemiology and evolution session chaired by Sam.

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Ben PascoeGenetic bottlenecks in the evolution of an agriculture-associated disease causing clade of Streptococcus suis in SE Asia.
Jessica Calland: A microevolutionary approach using whole genome sequences to estimate the molecular clock in Campylobacter: a rapidly evolving zoonotic pathogen under purifying selection
Evangelos Mourkas: Host adaptation of Campylobacter jejuni in cattle

 

 

Report on SMBE Satellite meeting in Assam, India – December 2017

On 14th-16th December 2017, Prof. Sam Sheppard and Dr. Sion Bayliss from the Sheppard Lab (University of Bath) presented the MRC CLIMB project at the SMBE satellite meeting – “Evolution of microbes in natural and experimental populations”. The meeting was hosted by Dr. Siddartha Satapathy and Prof. Suvendra Ray (Tezpur University, Assam, India) in Kaziranga National Park, Assam, India.

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During the MRC CLIMB session, Sam Sheppard and Sion Bayliss introduced the CLIMB project, described the infrastructure and detailed the VM provisioning model. Sion Bayliss gave an introduction to methodologies used in the analysis of whole genome sequence data for microbial genomics. Dr. Harry Thorpe (University of Bath) provided a video walk-through of a data analysis project, from raw data to phylogenetic tree, by way of a user testimonial for CLIMB.

Finally, a limited-over cricket game between India and the Rest of the World unsurprisingly resulted in a smashing win from our Indian hosts (by 6 wickets)!

The full final report for the is available here.