Resources

Sheppard Laboratory GitHub

https://github.com/sheppardlab

Genome databases

Campylobacter BIGSdb server
Multispecies BIGSdb server
Helicobacter BIGSdb server
Staphylococcus BIGSdb server
Staphylococcus BIGSdb server (public)

Aquaculture pathogens BIGSdb server

Intergenic region (IGR) analyses (PIGGY)

Thorpe et al. (2017) multilocus intergenic region (IGR) scheme (S_aureus_Intergenic_PIGGY) for Staphylococcus aureus
Link to the database/scheme

S. epidermidis pGWAS study

Méric, Mageiros et al. (2018) in preparation
Link to the genome database

Supplementary data

  • Murray, Pascoe et al. (2017) Genome Biology and Evolution – Publicly accessible genomes of Recombination-mediated host-adaptation by avian Staphylococcus aureus [Link]
  • Meric et al. (2015) Genome Biology and Evolution – Publicly accessible genomes of Staphylococcus aureus and S. epidermidis and corresponding sets of core genes [Link]
  • Supplementary material for Méric et al. (2016) The Lancet Infectious Diseases: E. coli NCTC86 genomic characterisation

Cloud-computing

Sign up to MRC Cloud Infrastructure for Microbial Bioinformatics (CLIMB).

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